Recursive Deep Prior Video: A super resolution algorithm for time-lapse microscopy of organ-on-chip experiments
نویسندگان
چکیده
Biological experiments based on organ-on-chips (OOCs) exploit light Time-Lapse Microscopy (TLM) for a direct observation of cell movement that is an observable signature underlying biological processes. A high spatial resolution essential to capture dynamics and interactions from recorded by TLM. Unfortunately, due physical cost limitations, acquiring videos not always possible. To overcome the problem, we present here new deep learning-based algorithm extends well-known Deep Image Prior (DIP) TLM Video Super Resolution without requiring any training. The proposed Recursive method introduces some novelties. weights DIP network architecture are initialized each frames according recursive updating rule combined with efficient early stopping criterion. Moreover, loss function penalized two different Total Variation-based terms. has been validated synthetic, i.e., artificially generated, as well real OOC related tumor-immune interaction. achieved results compared several state-of-the-art trained learning algorithms showing outstanding performances.
منابع مشابه
Super resolution of time-lapse seismic images
We present results of an on-going project to assess the applicability in reflection seismology of emerging super resolution techniques pioneered in digital photography. Our approach involves: (1) construction of a forward model connecting low resolution seismic images to high resolution ones, and (2) solution of a Tikhonov-regularized ill conditioned optimization problem to construct a high res...
متن کاملDictionary-based phase retrieval for space-time super resolution using lens-free on-chip holographic video
We propose a dictionary-based phase retrieval approach for monitoring in vivo biological samples based on lens-free on-chip holographic video. Our results present a temporal increase of 9× with 4×4 sub-sampling. OCIS codes: 090.1995, 100.5070, 110.1758.
متن کاملA Deep Model for Super-resolution Enhancement from a Single Image
This study presents a method to reconstruct a high-resolution image using a deep convolution neural network. We propose a deep model, entitled Deep Block Super Resolution (DBSR), by fusing the output features of a deep convolutional network and a shallow convolutional network. In this way, our model benefits from high frequency and low frequency features extracted from deep and shallow networks...
متن کاملCounting Cells in Time-Lapse Microscopy using Deep Neural Networks
An automatic approach to counting any kind of cells could alleviate work of the experts and boost the research in fields such as regenerative medicine. In this paper, a method for microscopy cell counting using multiple frames (hence temporal information) is proposed. Unlike previous approaches where the cell counting is done independently in each frame (static cell counting), in this work the ...
متن کاملSNSMIL, a real-time single molecule identification and localization algorithm for super-resolution fluorescence microscopy
Single molecule localization based super-resolution fluorescence microscopy offers significantly higher spatial resolution than predicted by Abbe's resolution limit for far field optical microscopy. Such super-resolution images are reconstructed from wide-field or total internal reflection single molecule fluorescence recordings. Discrimination between emission of single fluorescent molecules a...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Medical Image Analysis
سال: 2021
ISSN: ['1361-8423', '1361-8431', '1361-8415']
DOI: https://doi.org/10.1016/j.media.2021.102124